J3_7MSM_011

3D structure

PDB id

7MSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mtb 70SIC in complex with MtbEttA at Trans_R0 state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.79 Å

Loop

Sequence

UGACG*CC*GAAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7MSM_011 not in the Motif Atlas

Geometric match to J3_4V9F_017

Geometric discrepancy: 0.2484

The information below is about J3_4V9F_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_12393.2

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

7MSM|1|A|U|1663
7MSM|1|A|G|1664
7MSM|1|A|A|1665
7MSM|1|A|C|1666
7MSM|1|A|G|1667
*
7MSM|1|A|C|1801
7MSM|1|A|C|1802
*
7MSM|1|A|G|1805
7MSM|1|A|A|1806
7MSM|1|A|A|1807
7MSM|1|A|A|1808
7MSM|1|A|A|1809
7MSM|1|A|G|1810

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2