J3_7MSZ_011

3D structure

PDB id

7MSZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mtb 70SIC in complex with MtbEttA at Trans_R1 state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7MSZ_011 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.1134

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn 3-way junction

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

7MSZ|1|A|U|2328
7MSZ|1|A|U|2329
7MSZ|1|A|G|2330
*
7MSZ|1|A|C|2433
7MSZ|1|A|U|2434
7MSZ|1|A|A|2435
7MSZ|1|A|A|2436
7MSZ|1|A|C|2437
*
7MSZ|1|A|G|2461
7MSZ|1|A|G|2462
7MSZ|1|A|A|2463
7MSZ|1|A|C|2464
7MSZ|1|A|A|2465
7MSZ|1|A|G|2466

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain H

50S ribosomal protein L9

Chain X

50S ribosomal protein L28