J3_7MSZ_029

3D structure

PDB id

7MSZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mtb 70SIC in complex with MtbEttA at Trans_R1 state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUG*CGAUAGCGGAUUAGUAC*GGAAUG

Length

27 nucleotides

Bulged bases

7MSZ|1|A|U|34, 7MSZ|1|A|U|537, 7MSZ|1|A|U|545

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7MSZ_029 not in the Motif Atlas

Homologous match to J3_5J7L_067

Geometric discrepancy: 0.2562

The information below is about J3_5J7L_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

7MSZ|1|A|C|32
7MSZ|1|A|U|33
7MSZ|1|A|U|34
7MSZ|1|A|G|35
*
7MSZ|1|A|C|534
7MSZ|1|A|G|535
7MSZ|1|A|A|536
7MSZ|1|A|U|537
7MSZ|1|A|A|538
7MSZ|1|A|G|539
7MSZ|1|A|C|540
7MSZ|1|A|G|541
7MSZ|1|A|G|542
7MSZ|1|A|A|543
7MSZ|1|A|U|544
7MSZ|1|A|U|545
7MSZ|1|A|A|546
7MSZ|1|A|G|547
7MSZ|1|A|U|548
7MSZ|1|A|A|549
7MSZ|1|A|C|550
*
7MSZ|1|A|G|557
7MSZ|1|A|G|558
7MSZ|1|A|A|559
7MSZ|1|A|A|560
7MSZ|1|A|U|561
7MSZ|1|A|G|562

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain E

50S ribosomal protein L4

Chain Q

50S ribosomal protein L20

Chain T

50S ribosomal protein L23