J3_7N1P_005

3D structure

PDB id

7N1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7N1P_005 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.0737

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

7N1P|1|16|C|936
7N1P|1|16|A|937
7N1P|1|16|A|938
7N1P|1|16|G|939
*
7N1P|1|16|C|1344
7N1P|1|16|U|1345
7N1P|1|16|A|1346
7N1P|1|16|G|1347
7N1P|1|16|U|1348
7N1P|1|16|A|1349
7N1P|1|16|A|1350
*
7N1P|1|16|U|1372
7N1P|1|16|G|1373
7N1P|1|16|A|1374
7N1P|1|16|A|1375
7N1P|1|16|U|1376
7N1P|1|16|A|1377
7N1P|1|16|C|1378
7N1P|1|16|G|1379

Current chains

Chain 16

16S rRNA

Nearby chains

Chain SG

30S ribosomal protein S7

Chain SI

30S ribosomal protein S9