J3_7N2C_020

3D structure

PDB id

7N2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a fusidic acid-stalled intermediate state of translocation bound to EF-G(GDP) (INT2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

UCGACC*GAAA*UA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7N2C_020 not in the Motif Atlas

Homologous match to J3_5J7L_043

Geometric discrepancy: 0.1027

The information below is about J3_5J7L_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92705.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

1

Unit IDs

7N2C|1|23|U|1344
7N2C|1|23|C|1345
7N2C|1|23|G|1346
7N2C|1|23|A|1347
7N2C|1|23|C|1348
7N2C|1|23|C|1349
*
7N2C|1|23|G|1382
7N2C|1|23|A|1383
7N2C|1|23|A|1384
7N2C|1|23|A|1385
*
7N2C|1|23|U|1402
7N2C|1|23|A|1403

Current chains

Chain 23

23S rRNA

Nearby chains

Chain LW

50S ribosomal protein L23