J3_7N2V_018

3D structure

PDB id

7N2V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a spectinomycin-stalled intermediate state of translocation bound to EF-G in an active, GTP conformation (INT1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7N2V_018 not in the Motif Atlas

Homologous match to J3_5J7L_040

Geometric discrepancy: 0.1578

The information below is about J3_5J7L_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

7N2V|1|23|G|1055
7N2V|1|23|G|1056
7N2V|1|23|A|1057
*
7N2V|1|23|U|1081
7N2V|1|23|U|1082
7N2V|1|23|U|1083
7N2V|1|23|A|1084
7N2V|1|23|A|1085
7N2V|1|23|A|1086
7N2V|1|23|G|1087
*
7N2V|1|23|C|1102
7N2V|1|23|A|1103
7N2V|1|23|C|1104

Current chains

Chain 23

23S rRNA

Nearby chains

Chain LJ

50S ribosomal protein L10

Chain LK

50S ribosomal protein L11

Chain Lj

50S ribosomal protein L36