J3_7N2V_033
3D structure
- PDB id
- 7N2V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Elongating 70S ribosome complex in a spectinomycin-stalled intermediate state of translocation bound to EF-G in an active, GTP conformation (INT1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.54 Å
Loop
- Sequence
- GC*GCGAAAAGAAC*GAGUGAAAAAGAACC
- Length
- 28 nucleotides
- Bulged bases
- 7N2V|1|23|A|504, 7N2V|1|23|A|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7N2V_033 not in the Motif Atlas
- Homologous match to J3_5J7L_066
- Geometric discrepancy: 0.0629
- The information below is about J3_5J7L_066
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_92134.2
- Basepair signature
- cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
7N2V|1|23|G|30
7N2V|1|23|C|31
*
7N2V|1|23|G|474
7N2V|1|23|C|475
7N2V|1|23|G|476
7N2V|1|23|A|477
7N2V|1|23|A|478
7N2V|1|23|A|479
7N2V|1|23|A|480
7N2V|1|23|G|481
7N2V|1|23|A|482
7N2V|1|23|A|483
7N2V|1|23|C|484
*
7N2V|1|23|G|496
7N2V|1|23|A|497
7N2V|1|23|G|498
7N2V|1|23|U|499
7N2V|1|23|G|500
7N2V|1|23|A|501
7N2V|1|23|A|502
7N2V|1|23|A|503
7N2V|1|23|A|504
7N2V|1|23|A|505
7N2V|1|23|G|506
7N2V|1|23|A|507
7N2V|1|23|A|508
7N2V|1|23|C|509
7N2V|1|23|C|510
Current chains
- Chain 23
- 23S rRNA
Nearby chains
- Chain LT
- 50S ribosomal protein L20
- Chain LV
- 50S ribosomal protein L22
- Chain LX
- 50S ribosomal protein L24
Coloring options: