J3_7N2V_034
3D structure
- PDB id
- 7N2V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Elongating 70S ribosome complex in a spectinomycin-stalled intermediate state of translocation bound to EF-G in an active, GTP conformation (INT1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.54 Å
Loop
- Sequence
- CCUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 7N2V|1|23|U|34, 7N2V|1|23|U|448, 7N2V|1|23|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7N2V_034 not in the Motif Atlas
- Homologous match to J3_5J7L_067
- Geometric discrepancy: 0.0622
- The information below is about J3_5J7L_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
7N2V|1|23|C|32
7N2V|1|23|C|33
7N2V|1|23|U|34
7N2V|1|23|G|35
*
7N2V|1|23|C|445
7N2V|1|23|G|446
7N2V|1|23|A|447
7N2V|1|23|U|448
7N2V|1|23|A|449
7N2V|1|23|G|450
7N2V|1|23|U|451
7N2V|1|23|G|452
7N2V|1|23|A|453
7N2V|1|23|A|454
7N2V|1|23|C|455
7N2V|1|23|C|456
7N2V|1|23|A|457
7N2V|1|23|G|458
7N2V|1|23|U|459
7N2V|1|23|A|460
7N2V|1|23|C|461
*
7N2V|1|23|G|468
7N2V|1|23|G|469
7N2V|1|23|A|470
7N2V|1|23|A|471
7N2V|1|23|A|472
7N2V|1|23|G|473
Current chains
- Chain 23
- 23S rRNA
Nearby chains
- Chain LD
- 50S ribosomal protein L4
- Chain LT
- 50S ribosomal protein L20
- Chain LW
- 50S ribosomal protein L23
- Chain Lh
- 50S ribosomal protein L34
Coloring options: