J3_7N8B_002
3D structure
- PDB id
- 7N8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cycloheximide bound vacant 80S structure isolated from cbf5-D95A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.05 Å
Loop
- Sequence
- AUGAAAAG*CG*CU
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7N8B_002 not in the Motif Atlas
- Geometric match to J3_8C3A_048
- Geometric discrepancy: 0.0742
- The information below is about J3_8C3A_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_69021.1
- Basepair signature
- cWW-tWH-cWW-tSH-F-cWW-F
- Number of instances in this motif group
- 7
Unit IDs
7N8B|1|A1|A|369
7N8B|1|A1|U|370
7N8B|1|A1|G|371
7N8B|1|A1|A|372
7N8B|1|A1|A|373
7N8B|1|A1|A|374
7N8B|1|A1|A|375
7N8B|1|A1|G|376
*
7N8B|1|A1|C|403
7N8B|1|A1|G|404
*
7N8B|1|A4|C|19
7N8B|1|A4|U|20
Current chains
- Chain A1
- 25S
- Chain A4
- 5.8S
Nearby chains
- Chain AC
- 60S ribosomal protein L4-A
- Chain AY
- 60S ribosomal protein L26-A
- Chain Al
- 60S ribosomal protein L39
Coloring options: