J3_7N8B_007

3D structure

PDB id

7N8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cycloheximide bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

UGAAGUG*CAA*UCUA

Length

14 nucleotides

Bulged bases

7N8B|1|A1|A|1482

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7N8B_007 not in the Motif Atlas

Homologous match to J3_8C3A_006

Geometric discrepancy: 0.0886

The information below is about J3_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

7N8B|1|A1|U|1479
7N8B|1|A1|G|1480
7N8B|1|A1|A|1481
7N8B|1|A1|A|1482
7N8B|1|A1|G|1483
7N8B|1|A1|U|1484
7N8B|1|A1|G|1485
*
7N8B|1|A1|C|1857
7N8B|1|A1|A|1858
7N8B|1|A1|A|1859
*
7N8B|1|A1|U|1871
7N8B|1|A1|C|1872
7N8B|1|A1|U|1873
7N8B|1|A1|A|1874

Current chains

Chain A1

25S

Nearby chains

Chain AR

60S ribosomal protein L19-A

Chain Ag

60S ribosomal protein L34-A