J3_7N8B_022

3D structure

PDB id

7N8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cycloheximide bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CCAG*CUAGUAA*UGAUUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7N8B_022 not in the Motif Atlas

Homologous match to J3_8C3A_038

Geometric discrepancy: 0.0995

The information below is about J3_8C3A_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.2

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7N8B|1|B5|C|1161
7N8B|1|B5|C|1162
7N8B|1|B5|A|1163
7N8B|1|B5|G|1164
*
7N8B|1|B5|C|1581
7N8B|1|B5|U|1582
7N8B|1|B5|A|1583
7N8B|1|B5|G|1584
7N8B|1|B5|U|1585
7N8B|1|B5|A|1586
7N8B|1|B5|A|1587
*
7N8B|1|B5|U|1609
7N8B|1|B5|G|1610
7N8B|1|B5|A|1611
7N8B|1|B5|U|1612
7N8B|1|B5|U|1613
7N8B|1|B5|A|1614
7N8B|1|B5|C|1615
7N8B|1|B5|G|1616

Current chains

Chain B5

18S RIBOSOMAL RNA

Nearby chains

Chain BF

40S ribosomal protein S5

Chain BQ

40S ribosomal protein S16-A

Chain Bc

40S ribosomal protein S28-A