J3_7N8B_033
3D structure
- PDB id
- 7N8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cycloheximide bound vacant 80S structure isolated from cbf5-D95A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.05 Å
Loop
- Sequence
- AUGAAAAGAAC*GAGUGAAAAAGUACG*CU
- Length
- 28 nucleotides
- Bulged bases
- 7N8B|1|A1|A|398, 7N8B|1|A1|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7N8B_033 not in the Motif Atlas
- Homologous match to J3_8P9A_047
- Geometric discrepancy: 0.0719
- The information below is about J3_8P9A_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.1
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
7N8B|1|A1|A|369
7N8B|1|A1|U|370
7N8B|1|A1|G|371
7N8B|1|A1|A|372
7N8B|1|A1|A|373
7N8B|1|A1|A|374
7N8B|1|A1|A|375
7N8B|1|A1|G|376
7N8B|1|A1|A|377
7N8B|1|A1|A|378
7N8B|1|A1|C|379
*
7N8B|1|A1|G|390
7N8B|1|A1|A|391
7N8B|1|A1|G|392
7N8B|1|A1|U|393
7N8B|1|A1|G|394
7N8B|1|A1|A|395
7N8B|1|A1|A|396
7N8B|1|A1|A|397
7N8B|1|A1|A|398
7N8B|1|A1|A|399
7N8B|1|A1|G|400
7N8B|1|A1|U|401
7N8B|1|A1|A|402
7N8B|1|A1|C|403
7N8B|1|A1|G|404
*
7N8B|1|A4|C|19
7N8B|1|A4|U|20
Current chains
- Chain A1
- 25S
- Chain A4
- 5.8S
Nearby chains
- Chain AC
- 60S ribosomal protein L4-A
- Chain AP
- 60S ribosomal protein L17-A
- Chain AY
- 60S ribosomal protein L26-A
- Chain Al
- 60S ribosomal protein L39
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