J3_7N8B_038
3D structure
- PDB id
- 7N8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cycloheximide bound vacant 80S structure isolated from cbf5-D95A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.05 Å
Loop
- Sequence
- GUC*GCCUAUCGAUCC*(OMG)GUGCC
- Length
- 21 nucleotides
- Bulged bases
- 7N8B|1|A1|C|2760, 7N8B|1|A1|C|2797
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7N8B_038 not in the Motif Atlas
- Homologous match to J3_8C3A_056
- Geometric discrepancy: 0.0562
- The information below is about J3_8C3A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_27903.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
7N8B|1|A1|G|2651
7N8B|1|A1|U|2652
7N8B|1|A1|C|2653
*
7N8B|1|A1|G|2754
7N8B|1|A1|C|2755
7N8B|1|A1|C|2756
7N8B|1|A1|U|2757
7N8B|1|A1|A|2758
7N8B|1|A1|U|2759
7N8B|1|A1|C|2760
7N8B|1|A1|G|2761
7N8B|1|A1|A|2762
7N8B|1|A1|U|2763
7N8B|1|A1|C|2764
7N8B|1|A1|C|2765
*
7N8B|1|A1|OMG|2793
7N8B|1|A1|G|2794
7N8B|1|A1|U|2795
7N8B|1|A1|G|2796
7N8B|1|A1|C|2797
7N8B|1|A1|C|2798
Current chains
- Chain A1
- 25S
Nearby chains
- Chain AQ
- 60S ribosomal protein L18-A
- Chain AT
- 60S ribosomal protein L21-A
- Chain Aa
- 60S ribosomal protein L28
- Chain Ao
- 60S ribosomal protein L42-A
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