J3_7N8B_041

3D structure

PDB id

7N8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cycloheximide bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

AGAUUAAG*CGCGC(A2M)AAU*AGU

Length

20 nucleotides

Bulged bases

7N8B|1|B5|A|47

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7N8B_041 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.067

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7N8B|1|B5|A|41
7N8B|1|B5|G|42
7N8B|1|B5|A|43
7N8B|1|B5|U|44
7N8B|1|B5|U|45
7N8B|1|B5|A|46
7N8B|1|B5|A|47
7N8B|1|B5|G|48
*
7N8B|1|B5|C|431
7N8B|1|B5|G|432
7N8B|1|B5|C|433
7N8B|1|B5|G|434
7N8B|1|B5|C|435
7N8B|1|B5|A2M|436
7N8B|1|B5|A|437
7N8B|1|B5|A|438
7N8B|1|B5|U|439
*
7N8B|1|B5|A|464
7N8B|1|B5|G|465
7N8B|1|B5|U|466

Current chains

Chain B5

18S RIBOSOMAL RNA

Nearby chains

Chain BJ

40S ribosomal protein S9-A

Chain BX

40S ribosomal protein S23-A