J3_7NAU_006

3D structure

PDB id

7NAU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state C (Consensus Refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.78 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NAU_006 not in the Motif Atlas

Homologous match to J3_4LFB_003

Geometric discrepancy: 0.1274

The information below is about J3_4LFB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_52655.4

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

7NAU|1|A|U|943
7NAU|1|A|G|944
7NAU|1|A|G|945
7NAU|1|A|A|946
*
7NAU|1|A|U|1235
7NAU|1|A|A|1236
7NAU|1|A|C|1237
*
7NAU|1|A|G|1337
7NAU|1|A|G|1338
7NAU|1|A|A|1339
7NAU|1|A|A|1340

Current chains

Chain A

16S rRNA

Nearby chains

Chain I

30S ribosomal protein S9

Chain M

30S ribosomal protein S13