3D structure

PDB id
7NAU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Bacterial 30S ribosomal subunit assembly complex state C (Consensus Refinement)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.78 Å

Loop

Sequence
UUUAAUUC*GAAGAACCUUAC*GGCUA
Length
25 nucleotides
Bulged bases
7NAU|1|A|A|975, 7NAU|1|A|G|976, 7NAU|1|A|A|978
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7NAU_007 not in the Motif Atlas
Homologous match to J3_5J7L_006
Geometric discrepancy: 0.0912
The information below is about J3_5J7L_006
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_83516.4
Basepair signature
cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

7NAU|1|A|U|955
7NAU|1|A|U|956
7NAU|1|A|U|957
7NAU|1|A|A|958
7NAU|1|A|A|959
7NAU|1|A|U|960
7NAU|1|A|U|961
7NAU|1|A|C|962
*
7NAU|1|A|G|973
7NAU|1|A|A|974
7NAU|1|A|A|975
7NAU|1|A|G|976
7NAU|1|A|A|977
7NAU|1|A|A|978
7NAU|1|A|C|979
7NAU|1|A|C|980
7NAU|1|A|U|981
7NAU|1|A|U|982
7NAU|1|A|A|983
7NAU|1|A|C|984
*
7NAU|1|A|G|1221
7NAU|1|A|G|1222
7NAU|1|A|C|1223
7NAU|1|A|U|1224
7NAU|1|A|A|1225

Current chains

Chain A
16S rRNA

Nearby chains

Chain I
30S ribosomal protein S9
Chain J
30S ribosomal protein S10
Chain M
30S ribosomal protein S13
Chain N
30S ribosomal protein S14
Chain S
30S ribosomal protein S19

Coloring options:


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