J3_7NAV_007
3D structure
- PDB id
- 7NAV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Bacterial 30S ribosomal subunit assembly complex state D (Consensus refinement)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.8 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 7NAV|1|A|A|975, 7NAV|1|A|G|976, 7NAV|1|A|A|978
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7NAV_007 not in the Motif Atlas
- Geometric match to J3_5J7L_006
- Geometric discrepancy: 0.1365
- The information below is about J3_5J7L_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
7NAV|1|A|U|955
7NAV|1|A|U|956
7NAV|1|A|U|957
7NAV|1|A|A|958
7NAV|1|A|A|959
7NAV|1|A|U|960
7NAV|1|A|U|961
7NAV|1|A|C|962
*
7NAV|1|A|G|973
7NAV|1|A|A|974
7NAV|1|A|A|975
7NAV|1|A|G|976
7NAV|1|A|A|977
7NAV|1|A|A|978
7NAV|1|A|C|979
7NAV|1|A|C|980
7NAV|1|A|U|981
7NAV|1|A|U|982
7NAV|1|A|A|983
7NAV|1|A|C|984
*
7NAV|1|A|G|1221
7NAV|1|A|G|1222
7NAV|1|A|C|1223
7NAV|1|A|U|1224
7NAV|1|A|A|1225
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain J
- 30S ribosomal protein S10
- Chain M
- 30S ribosomal protein S13
- Chain N
- 30S ribosomal protein S14
- Chain S
- 30S ribosomal protein S19
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