3D structure

PDB id
7NAV (explore in PDB, NAKB, or RNA 3D Hub)
Description
Bacterial 30S ribosomal subunit assembly complex state D (Consensus refinement)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.8 Å

Loop

Sequence
CGUCAG*CGCAACC*GAUGACG
Length
20 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7NAV_010 not in the Motif Atlas
Homologous match to J3_5J7L_008
Geometric discrepancy: 0.1751
The information below is about J3_5J7L_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_08394.3
Basepair signature
cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

7NAV|1|A|C|1063
7NAV|1|A|G|1064
7NAV|1|A|U|1065
7NAV|1|A|C|1066
7NAV|1|A|A|1067
7NAV|1|A|G|1068
*
7NAV|1|A|C|1107
7NAV|1|A|G|1108
7NAV|1|A|C|1109
7NAV|1|A|A|1110
7NAV|1|A|A|1111
7NAV|1|A|C|1112
7NAV|1|A|C|1113
*
7NAV|1|A|G|1187
7NAV|1|A|A|1188
7NAV|1|A|U|1189
7NAV|1|A|G|1190
7NAV|1|A|A|1191
7NAV|1|A|C|1192
7NAV|1|A|G|1193

Current chains

Chain A
16S rRNA

Nearby chains

Chain B
30S ribosomal protein S2
Chain C
30S ribosomal protein S3
Chain E
30S ribosomal protein S5
Chain G
30S ribosomal protein S7
Chain I
30S ribosomal protein S9
Chain J
30S ribosomal protein S10
Chain N
30S ribosomal protein S14

Coloring options:


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