3D structure

PDB id
7NBU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the HigB1 toxin mutant K95A from Mycobacterium tuberculosis (Rv1955) and its target, the cspA mRNA, on the E. coli Ribosome.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.11 Å

Loop

Sequence
CUUG*CAG*CUUACG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7NBU_008 not in the Motif Atlas
Homologous match to J3_4LFB_005
Geometric discrepancy: 0.1595
The information below is about J3_4LFB_005
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_82572.1
Basepair signature
cWW-tSH-tWW-F-cWW-tHW-F-F-cWW
Number of instances in this motif group
2

Unit IDs

7NBU|1|A|C|990
7NBU|1|A|U|991
7NBU|1|A|U|992
7NBU|1|A|G|993
*
7NBU|1|A|C|1045
7NBU|1|A|A|1046
7NBU|1|A|G|1047
*
7NBU|1|A|C|1210
7NBU|1|A|U|1211
7NBU|1|A|U|1212
7NBU|1|A|A|1213
7NBU|1|A|C|1214
7NBU|1|A|G|1215

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain N
30S ribosomal protein S14
Chain Y
Probable endoribonuclease HigB1

Coloring options:


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