J3_7NBU_010

3D structure

PDB id

7NBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HigB1 toxin mutant K95A from Mycobacterium tuberculosis (Rv1955) and its target, the cspA mRNA, on the E. coli Ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

CGUCAG*CGCAACC*GAUGACG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NBU_010 not in the Motif Atlas

Homologous match to J3_5J7L_008

Geometric discrepancy: 0.1109

The information below is about J3_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_08394.3

Basepair signature

cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7NBU|1|A|C|1063
7NBU|1|A|G|1064
7NBU|1|A|U|1065
7NBU|1|A|C|1066
7NBU|1|A|A|1067
7NBU|1|A|G|1068
*
7NBU|1|A|C|1107
7NBU|1|A|G|1108
7NBU|1|A|C|1109
7NBU|1|A|A|1110
7NBU|1|A|A|1111
7NBU|1|A|C|1112
7NBU|1|A|C|1113
*
7NBU|1|A|G|1187
7NBU|1|A|A|1188
7NBU|1|A|U|1189
7NBU|1|A|G|1190
7NBU|1|A|A|1191
7NBU|1|A|C|1192
7NBU|1|A|G|1193

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain C

30S ribosomal protein S3

Chain E

30S ribosomal protein S5

Chain G

30S ribosomal protein S7

Chain I

30S ribosomal protein S9

Chain J

30S ribosomal protein S10

Chain N

30S ribosomal protein S14