J3_7NBU_021

3D structure

PDB id

7NBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HigB1 toxin mutant K95A from Mycobacterium tuberculosis (Rv1955) and its target, the cspA mRNA, on the E. coli Ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NBU_021 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.0727

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn in J3

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

7NBU|1|a|C|2091
7NBU|1|a|U|2092
7NBU|1|a|G|2093
*
7NBU|1|a|C|2196
7NBU|1|a|U|2197
7NBU|1|a|A|2198
7NBU|1|a|A|2199
7NBU|1|a|C|2200
*
7NBU|1|a|G|2223
7NBU|1|a|G|2224
7NBU|1|a|A|2225
7NBU|1|a|C|2226
7NBU|1|a|A|2227
7NBU|1|a|G|2228

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L2

Chain h

50S ribosomal protein L9

Chain w

50S ribosomal protein L28