J3_7NHK_001

3D structure

PDB id

7NHK (explore in PDB, NAKB, or RNA 3D Hub)

Description

LsaA, an antibiotic resistance ABCF, in complex with 70S ribosome from Enterococcus faecalis

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GC*GUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NHK_001 not in the Motif Atlas

Geometric match to J3_8C3A_048

Geometric discrepancy: 0.1018

The information below is about J3_8C3A_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69021.1

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

7

Unit IDs

7NHK|1|A|G|30
7NHK|1|A|C|31
*
7NHK|1|A|G|513
7NHK|1|A|U|514
7NHK|1|A|G|515
7NHK|1|A|A|516
7NHK|1|A|A|517
7NHK|1|A|A|518
7NHK|1|A|A|519
7NHK|1|A|G|520
*
7NHK|1|A|C|547
7NHK|1|A|C|548

Current chains

Chain A

23S rRNA

Nearby chains

Chain T

50S ribosomal protein L20

Chain X

50S ribosomal protein L24