J3_7NHK_007

3D structure

PDB id

7NHK (explore in PDB, NAKB, or RNA 3D Hub)

Description

LsaA, an antibiotic resistance ABCF, in complex with 70S ribosome from Enterococcus faecalis

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGUAUG*CGA*UAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NHK_007 not in the Motif Atlas

Homologous match to J3_7RQB_007

Geometric discrepancy: 0.1185

The information below is about J3_7RQB_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.3

Basepair signature

cWW-tSH-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

7NHK|1|A|C|1333
7NHK|1|A|G|1334
7NHK|1|A|U|1335
7NHK|1|A|A|1336
7NHK|1|A|U|1337
7NHK|1|A|G|1338
*
7NHK|1|A|C|1667
7NHK|1|A|G|1668
7NHK|1|A|A|1669
*
7NHK|1|A|U|1681
7NHK|1|A|A|1682
7NHK|1|A|A|1683
7NHK|1|A|G|1684

Current chains

Chain A

23S rRNA

Nearby chains