J3_7NHK_008
3D structure
- PDB id
- 7NHK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- LsaA, an antibiotic resistance ABCF, in complex with 70S ribosome from Enterococcus faecalis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUAAG*CGUAAAC*GUAG
- Length
- 16 nucleotides
- Bulged bases
- 7NHK|1|A|U|1649, 7NHK|1|A|A|1651
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7NHK_008 not in the Motif Atlas
- Homologous match to J3_4WF9_005
- Geometric discrepancy: 0.1684
- The information below is about J3_4WF9_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_68164.1
- Basepair signature
- cWW-tSH-F-F-tHW-F-F-cWW-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
7NHK|1|A|C|1340
7NHK|1|A|U|1341
7NHK|1|A|A|1342
7NHK|1|A|A|1343
7NHK|1|A|G|1344
*
7NHK|1|A|C|1647
7NHK|1|A|G|1648
7NHK|1|A|U|1649
7NHK|1|A|A|1650
7NHK|1|A|A|1651
7NHK|1|A|A|1652
7NHK|1|A|C|1653
*
7NHK|1|A|G|1662
7NHK|1|A|U|1663
7NHK|1|A|A|1664
7NHK|1|A|G|1665
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 6
- 50S ribosomal protein L34
Coloring options: