J3_7NHK_018
3D structure
- PDB id
- 7NHK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- LsaA, an antibiotic resistance ABCF, in complex with 70S ribosome from Enterococcus faecalis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UG*CACCAGUGG*CGG
- Length
- 14 nucleotides
- Bulged bases
- 7NHK|1|a|U|749
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7NHK_018 not in the Motif Atlas
- Homologous match to J3_5J7L_003
- Geometric discrepancy: 0.1704
- The information below is about J3_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11934.4
- Basepair signature
- cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
7NHK|1|a|U|698
7NHK|1|a|G|699
*
7NHK|1|a|C|743
7NHK|1|a|A|744
7NHK|1|a|C|745
7NHK|1|a|C|746
7NHK|1|a|A|747
7NHK|1|a|G|748
7NHK|1|a|U|749
7NHK|1|a|G|750
7NHK|1|a|G|751
*
7NHK|1|a|C|758
7NHK|1|a|G|759
7NHK|1|a|G|760
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain b
- RNA (5'-R(P*GP*GP*AP*GP*GP*UP*AP*UP*GP*AP*CP*AP*A)-3')
- Chain g
- 30S ribosomal protein S6
- Chain l
- 30S ribosomal protein S11
- Chain p
- 30S ribosomal protein S15
- Chain s
- 30S ribosomal protein S18
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