J3_7NHK_022
3D structure
- PDB id
- 7NHK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- LsaA, an antibiotic resistance ABCF, in complex with 70S ribosome from Enterococcus faecalis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 7NHK|1|a|A|1002, 7NHK|1|a|G|1003
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7NHK_022 not in the Motif Atlas
- Homologous match to J3_5J7L_006
- Geometric discrepancy: 0.0896
- The information below is about J3_5J7L_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
7NHK|1|a|U|982
7NHK|1|a|U|983
7NHK|1|a|U|984
7NHK|1|a|A|985
7NHK|1|a|A|986
7NHK|1|a|U|987
7NHK|1|a|U|988
7NHK|1|a|C|989
*
7NHK|1|a|G|1000
7NHK|1|a|A|1001
7NHK|1|a|A|1002
7NHK|1|a|G|1003
7NHK|1|a|A|1004
7NHK|1|a|A|1005
7NHK|1|a|C|1006
7NHK|1|a|C|1007
7NHK|1|a|U|1008
7NHK|1|a|U|1009
7NHK|1|a|A|1010
7NHK|1|a|C|1011
*
7NHK|1|a|G|1247
7NHK|1|a|G|1248
7NHK|1|a|C|1249
7NHK|1|a|U|1250
7NHK|1|a|A|1251
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain k
- 30S ribosomal protein S10
- Chain n
- 30S ribosomal protein S13
- Chain o
- 30S ribosomal protein S14 type Z
- Chain t
- 30S ribosomal protein S19
Coloring options: