J3_7NHK_030
3D structure
- PDB id
- 7NHK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- LsaA, an antibiotic resistance ABCF, in complex with 70S ribosome from Enterococcus faecalis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 7NHK|1|A|U|487, 7NHK|1|A|C|495
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7NHK_030 not in the Motif Atlas
- Homologous match to J3_9DFE_003
- Geometric discrepancy: 0.0916
- The information below is about J3_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.2
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 11
Unit IDs
7NHK|1|A|C|32
7NHK|1|A|U|33
7NHK|1|A|U|34
7NHK|1|A|G|35
*
7NHK|1|A|C|484
7NHK|1|A|G|485
7NHK|1|A|A|486
7NHK|1|A|U|487
7NHK|1|A|A|488
7NHK|1|A|G|489
7NHK|1|A|U|490
7NHK|1|A|G|491
7NHK|1|A|A|492
7NHK|1|A|A|493
7NHK|1|A|C|494
7NHK|1|A|C|495
7NHK|1|A|A|496
7NHK|1|A|G|497
7NHK|1|A|U|498
7NHK|1|A|A|499
7NHK|1|A|C|500
*
7NHK|1|A|G|507
7NHK|1|A|G|508
7NHK|1|A|A|509
7NHK|1|A|A|510
7NHK|1|A|A|511
7NHK|1|A|G|512
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 6
- 50S ribosomal protein L34
- Chain I
- 50S ribosomal protein L4
- Chain T
- 50S ribosomal protein L20
- Chain W
- 50S ribosomal protein L23
Coloring options: