J3_7NHL_008

3D structure

PDB id

7NHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUAAG*CGCAAAC*GUAG

Length

16 nucleotides

Bulged bases

7NHL|1|A|A|1653

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NHL_008 not in the Motif Atlas

Homologous match to J3_4WF9_005

Geometric discrepancy: 0.1007

The information below is about J3_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68164.1

Basepair signature

cWW-tSH-F-F-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

1

Unit IDs

7NHL|1|A|C|1342
7NHL|1|A|U|1343
7NHL|1|A|A|1344
7NHL|1|A|A|1345
7NHL|1|A|G|1346
*
7NHL|1|A|C|1649
7NHL|1|A|G|1650
7NHL|1|A|C|1651
7NHL|1|A|A|1652
7NHL|1|A|A|1653
7NHL|1|A|A|1654
7NHL|1|A|C|1655
*
7NHL|1|A|G|1664
7NHL|1|A|U|1665
7NHL|1|A|A|1666
7NHL|1|A|G|1667

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L34