J3_7NHL_009

3D structure

PDB id

7NHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCGGGUC*GAUAA*UA

Length

14 nucleotides

Bulged bases

7NHL|1|A|A|1421

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NHL_009 not in the Motif Atlas

Homologous match to J3_7RQB_009

Geometric discrepancy: 0.1505

The information below is about J3_7RQB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04858.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

7NHL|1|A|U|1381
7NHL|1|A|C|1382
7NHL|1|A|G|1383
7NHL|1|A|G|1384
7NHL|1|A|G|1385
7NHL|1|A|U|1386
7NHL|1|A|C|1387
*
7NHL|1|A|G|1418
7NHL|1|A|A|1419
7NHL|1|A|U|1420
7NHL|1|A|A|1421
7NHL|1|A|A|1422
*
7NHL|1|A|U|1439
7NHL|1|A|A|1440

Current chains

Chain A

23S rRNA

Nearby chains

Chain W

50S ribosomal protein L23