J3_7NHL_012

3D structure

PDB id

7NHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

7NHL|1|A|A|2545, 7NHL|1|A|U|2546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NHL_012 not in the Motif Atlas

Homologous match to J3_4WF9_009

Geometric discrepancy: 0.101

The information below is about J3_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

7NHL|1|A|C|2544
7NHL|1|A|A|2545
7NHL|1|A|U|2546
7NHL|1|A|C|2547
*
7NHL|1|A|G|2572
7NHL|1|A|U|2573
7NHL|1|A|U|2574
*
7NHL|1|A|A|2588
7NHL|1|A|U|2589
7NHL|1|A|U|2590
7NHL|1|A|A|2591
7NHL|1|A|A|2592
7NHL|1|A|A|2593
7NHL|1|A|G|2594

Current chains

Chain A

23S rRNA

Nearby chains

Chain N

50S ribosomal protein L14