J3_7NHL_027
3D structure
- PDB id
- 7NHL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GC*GUGAAAAGCAC*GAGUGAAAUAGAACC
- Length
- 28 nucleotides
- Bulged bases
- 7NHL|1|A|U|549, 7NHL|1|A|A|553
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7NHL_027 not in the Motif Atlas
- Homologous match to J3_4WF9_011
- Geometric discrepancy: 0.2435
- The information below is about J3_4WF9_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.2
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 10
Unit IDs
7NHL|1|A|G|30
7NHL|1|A|C|31
*
7NHL|1|A|G|520
7NHL|1|A|U|521
7NHL|1|A|G|522
7NHL|1|A|A|523
7NHL|1|A|A|524
7NHL|1|A|A|525
7NHL|1|A|A|526
7NHL|1|A|G|527
7NHL|1|A|C|528
7NHL|1|A|A|529
7NHL|1|A|C|530
*
7NHL|1|A|G|541
7NHL|1|A|A|542
7NHL|1|A|G|543
7NHL|1|A|U|544
7NHL|1|A|G|545
7NHL|1|A|A|546
7NHL|1|A|A|547
7NHL|1|A|A|548
7NHL|1|A|U|549
7NHL|1|A|A|550
7NHL|1|A|G|551
7NHL|1|A|A|552
7NHL|1|A|A|553
7NHL|1|A|C|554
7NHL|1|A|C|555
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain T
- 50S ribosomal protein L20
- Chain V
- 50S ribosomal protein L22
- Chain W
- 50S ribosomal protein L23
- Chain X
- 50S ribosomal protein L24
Coloring options: