J3_7NHL_028
3D structure
- PDB id
- 7NHL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 7NHL|1|A|U|34, 7NHL|1|A|U|494, 7NHL|1|A|C|502
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7NHL_028 not in the Motif Atlas
- Homologous match to J3_9DFE_003
- Geometric discrepancy: 0.1042
- The information below is about J3_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.2
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 11
Unit IDs
7NHL|1|A|C|32
7NHL|1|A|U|33
7NHL|1|A|U|34
7NHL|1|A|G|35
*
7NHL|1|A|C|491
7NHL|1|A|G|492
7NHL|1|A|A|493
7NHL|1|A|U|494
7NHL|1|A|A|495
7NHL|1|A|G|496
7NHL|1|A|U|497
7NHL|1|A|G|498
7NHL|1|A|A|499
7NHL|1|A|A|500
7NHL|1|A|C|501
7NHL|1|A|C|502
7NHL|1|A|A|503
7NHL|1|A|G|504
7NHL|1|A|U|505
7NHL|1|A|A|506
7NHL|1|A|C|507
*
7NHL|1|A|G|514
7NHL|1|A|G|515
7NHL|1|A|A|516
7NHL|1|A|A|517
7NHL|1|A|A|518
7NHL|1|A|G|519
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 7
- 50S ribosomal protein L34
- Chain I
- 50S ribosomal protein L4
- Chain T
- 50S ribosomal protein L20
- Chain W
- 50S ribosomal protein L23
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