J3_7NHL_031

3D structure

PDB id

7NHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NHL_031 not in the Motif Atlas

Homologous match to J3_9DFE_013

Geometric discrepancy: 0.0983

The information below is about J3_9DFE_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

7NHL|1|A|G|1468
7NHL|1|A|G|1469
7NHL|1|A|G|1470
7NHL|1|A|A|1471
7NHL|1|A|C|1472
7NHL|1|A|G|1473
*
7NHL|1|A|C|1611
7NHL|1|A|C|1612
*
7NHL|1|A|G|1615
7NHL|1|A|A|1616
7NHL|1|A|A|1617
7NHL|1|A|A|1618
7NHL|1|A|A|1619
7NHL|1|A|G|1620
7NHL|1|A|C|1621

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L2