J3_7NHL_033

3D structure

PDB id

7NHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCCUAAU*AGGGAAUCU*AGC

Length

19 nucleotides

Bulged bases

7NHL|1|a|C|49, 7NHL|1|a|A|51, 7NHL|1|a|A|52

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NHL_033 not in the Motif Atlas

Homologous match to J3_4LFB_014

Geometric discrepancy: 0.111

The information below is about J3_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.2

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

7NHL|1|a|G|47
7NHL|1|a|C|48
7NHL|1|a|C|49
7NHL|1|a|U|50
7NHL|1|a|A|51
7NHL|1|a|A|52
7NHL|1|a|U|53
*
7NHL|1|a|A|367
7NHL|1|a|G|368
7NHL|1|a|G|369
7NHL|1|a|G|370
7NHL|1|a|A|371
7NHL|1|a|A|372
7NHL|1|a|U|373
7NHL|1|a|C|374
7NHL|1|a|U|375
*
7NHL|1|a|A|401
7NHL|1|a|G|402
7NHL|1|a|C|403

Current chains

Chain a

16S rRNA

Nearby chains

Chain m

30S ribosomal protein S12

Chain q

30S ribosomal protein S16