J3_7NHM_006

3D structure

PDB id

7NHM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NHM_006 not in the Motif Atlas

Homologous match to J3_5J7L_040

Geometric discrepancy: 0.3133

The information below is about J3_5J7L_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

7NHM|1|A|G|1099
7NHM|1|A|G|1100
7NHM|1|A|A|1101
*
7NHM|1|A|U|1125
7NHM|1|A|U|1126
7NHM|1|A|U|1127
7NHM|1|A|A|1128
7NHM|1|A|A|1129
7NHM|1|A|A|1130
7NHM|1|A|G|1131
*
7NHM|1|A|C|1146
7NHM|1|A|A|1147
7NHM|1|A|C|1148

Current chains

Chain A

23S rRNA

Nearby chains

Chain 9

50S ribosomal protein L36