J3_7NHM_008

3D structure

PDB id

7NHM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUAAG*CGCAAAC*GUAG

Length

16 nucleotides

Bulged bases

7NHM|1|A|A|1653

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NHM_008 not in the Motif Atlas

Homologous match to J3_4WF9_005

Geometric discrepancy: 0.1069

The information below is about J3_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68164.1

Basepair signature

cWW-tSH-F-F-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

1

Unit IDs

7NHM|1|A|C|1342
7NHM|1|A|U|1343
7NHM|1|A|A|1344
7NHM|1|A|A|1345
7NHM|1|A|G|1346
*
7NHM|1|A|C|1649
7NHM|1|A|G|1650
7NHM|1|A|C|1651
7NHM|1|A|A|1652
7NHM|1|A|A|1653
7NHM|1|A|A|1654
7NHM|1|A|C|1655
*
7NHM|1|A|G|1664
7NHM|1|A|U|1665
7NHM|1|A|A|1666
7NHM|1|A|G|1667

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L34