J3_7NHM_012

3D structure

PDB id

7NHM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

7NHM|1|A|A|2545, 7NHM|1|A|U|2546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NHM_012 not in the Motif Atlas

Homologous match to J3_4WF9_009

Geometric discrepancy: 0.1106

The information below is about J3_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

7NHM|1|A|C|2544
7NHM|1|A|A|2545
7NHM|1|A|U|2546
7NHM|1|A|C|2547
*
7NHM|1|A|G|2572
7NHM|1|A|U|2573
7NHM|1|A|U|2574
*
7NHM|1|A|A|2588
7NHM|1|A|U|2589
7NHM|1|A|U|2590
7NHM|1|A|A|2591
7NHM|1|A|A|2592
7NHM|1|A|A|2593
7NHM|1|A|G|2594

Current chains

Chain A

23S rRNA

Nearby chains

Chain N

50S ribosomal protein L14