J3_7NHN_008

3D structure

PDB id

7NHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUAAG*CGCAAAC*GUAG

Length

16 nucleotides

Bulged bases

7NHN|1|A|A|1658

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NHN_008 not in the Motif Atlas

Homologous match to J3_4WF9_005

Geometric discrepancy: 0.1055

The information below is about J3_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68164.1

Basepair signature

cWW-tSH-F-F-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

1

Unit IDs

7NHN|1|A|C|1349
7NHN|1|A|U|1350
7NHN|1|A|A|1351
7NHN|1|A|A|1352
7NHN|1|A|G|1353
*
7NHN|1|A|C|1654
7NHN|1|A|G|1655
7NHN|1|A|C|1656
7NHN|1|A|A|1657
7NHN|1|A|A|1658
7NHN|1|A|A|1659
7NHN|1|A|C|1660
*
7NHN|1|A|G|1669
7NHN|1|A|U|1670
7NHN|1|A|A|1671
7NHN|1|A|G|1672

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L34