J3_7NHN_009

3D structure

PDB id

7NHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UCGGGAC*GACAA*UA

Length

14 nucleotides

Bulged bases

7NHN|1|A|A|1428

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NHN_009 not in the Motif Atlas

Homologous match to J3_7RQB_009

Geometric discrepancy: 0.1402

The information below is about J3_7RQB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04858.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

7NHN|1|A|U|1388
7NHN|1|A|C|1389
7NHN|1|A|G|1390
7NHN|1|A|G|1391
7NHN|1|A|G|1392
7NHN|1|A|A|1393
7NHN|1|A|C|1394
*
7NHN|1|A|G|1425
7NHN|1|A|A|1426
7NHN|1|A|C|1427
7NHN|1|A|A|1428
7NHN|1|A|A|1429
*
7NHN|1|A|U|1446
7NHN|1|A|A|1447

Current chains

Chain A

23S rRNA

Nearby chains

Chain W

50S ribosomal protein L23