J3_7NHN_014

3D structure

PDB id

7NHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

7NHN|1|A|A|2551

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NHN_014 not in the Motif Atlas

Homologous match to J3_4WF9_009

Geometric discrepancy: 0.0858

The information below is about J3_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

7NHN|1|A|C|2550
7NHN|1|A|A|2551
7NHN|1|A|U|2552
7NHN|1|A|C|2553
*
7NHN|1|A|G|2578
7NHN|1|A|U|2579
7NHN|1|A|U|2580
*
7NHN|1|A|A|2594
7NHN|1|A|U|2595
7NHN|1|A|U|2596
7NHN|1|A|A|2597
7NHN|1|A|A|2598
7NHN|1|A|A|2599
7NHN|1|A|G|2600

Current chains

Chain A

23S rRNA

Nearby chains

Chain N

50S ribosomal protein L14