J3_7NHN_023
3D structure
- PDB id
- 7NHN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 7NHN|1|a|A|986, 7NHN|1|a|G|987
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7NHN_023 not in the Motif Atlas
- Homologous match to J3_4LFB_004
- Geometric discrepancy: 0.0929
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.2
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
7NHN|1|a|U|966
7NHN|1|a|U|967
7NHN|1|a|U|968
7NHN|1|a|A|969
7NHN|1|a|A|970
7NHN|1|a|U|971
7NHN|1|a|U|972
7NHN|1|a|C|973
*
7NHN|1|a|G|984
7NHN|1|a|A|985
7NHN|1|a|A|986
7NHN|1|a|G|987
7NHN|1|a|A|988
7NHN|1|a|A|989
7NHN|1|a|C|990
7NHN|1|a|C|991
7NHN|1|a|U|992
7NHN|1|a|U|993
7NHN|1|a|A|994
7NHN|1|a|C|995
*
7NHN|1|a|G|1230
7NHN|1|a|G|1231
7NHN|1|a|C|1232
7NHN|1|a|U|1233
7NHN|1|a|A|1234
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain k
- 30S ribosomal protein S10
- Chain n
- 30S ribosomal protein S13
- Chain o
- 30S ribosomal protein S14 type Z
- Chain t
- 30S ribosomal protein S19
Coloring options: