J3_7NHN_026
3D structure
- PDB id
- 7NHN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGUCAG*CGCAACC*GAUGACG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7NHN_026 not in the Motif Atlas
- Homologous match to J3_5J7L_008
- Geometric discrepancy: 0.1101
- The information below is about J3_5J7L_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08394.3
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
7NHN|1|a|C|1074
7NHN|1|a|G|1075
7NHN|1|a|U|1076
7NHN|1|a|C|1077
7NHN|1|a|A|1078
7NHN|1|a|G|1079
*
7NHN|1|a|C|1118
7NHN|1|a|G|1119
7NHN|1|a|C|1120
7NHN|1|a|A|1121
7NHN|1|a|A|1122
7NHN|1|a|C|1123
7NHN|1|a|C|1124
*
7NHN|1|a|G|1196
7NHN|1|a|A|1197
7NHN|1|a|U|1198
7NHN|1|a|G|1199
7NHN|1|a|A|1200
7NHN|1|a|C|1201
7NHN|1|a|G|1202
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain c
- 30S ribosomal protein S2
- Chain d
- 30S ribosomal protein S3
- Chain f
- 30S ribosomal protein S5
- Chain j
- 30S ribosomal protein S9
- Chain k
- 30S ribosomal protein S10
- Chain o
- 30S ribosomal protein S14 type Z
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