J3_7NHN_030
3D structure
- PDB id
- 7NHN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GC*GUGAAAAGCAC*GAGUGAAACAGUUCC
- Length
- 28 nucleotides
- Bulged bases
- 7NHN|1|A|C|549, 7NHN|1|A|U|553
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7NHN_030 not in the Motif Atlas
- Homologous match to J3_4WF9_011
- Geometric discrepancy: 0.2758
- The information below is about J3_4WF9_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.2
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 10
Unit IDs
7NHN|1|A|G|30
7NHN|1|A|C|31
*
7NHN|1|A|G|520
7NHN|1|A|U|521
7NHN|1|A|G|522
7NHN|1|A|A|523
7NHN|1|A|A|524
7NHN|1|A|A|525
7NHN|1|A|A|526
7NHN|1|A|G|527
7NHN|1|A|C|528
7NHN|1|A|A|529
7NHN|1|A|C|530
*
7NHN|1|A|G|541
7NHN|1|A|A|542
7NHN|1|A|G|543
7NHN|1|A|U|544
7NHN|1|A|G|545
7NHN|1|A|A|546
7NHN|1|A|A|547
7NHN|1|A|A|548
7NHN|1|A|C|549
7NHN|1|A|A|550
7NHN|1|A|G|551
7NHN|1|A|U|552
7NHN|1|A|U|553
7NHN|1|A|C|554
7NHN|1|A|C|555
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain T
- 50S ribosomal protein L20
- Chain V
- 50S ribosomal protein L22
- Chain X
- 50S ribosomal protein L24
Coloring options: