J3_7NHN_034
3D structure
- PDB id
- 7NHN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGG*CUGGA*UGACG
- Length
- 13 nucleotides
- Bulged bases
- 7NHN|1|a|G|663
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7NHN_034 not in the Motif Atlas
- Homologous match to J3_4LFB_015
- Geometric discrepancy: 0.1584
- The information below is about J3_4LFB_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.6
- Basepair signature
- cWW-F-cWW-cWW-F-F-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
7NHN|1|a|C|596
7NHN|1|a|G|597
7NHN|1|a|G|598
*
7NHN|1|a|C|661
7NHN|1|a|U|662
7NHN|1|a|G|663
7NHN|1|a|G|664
7NHN|1|a|A|665
*
7NHN|1|a|U|761
7NHN|1|a|G|762
7NHN|1|a|A|763
7NHN|1|a|C|764
7NHN|1|a|G|765
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain i
- 30S ribosomal protein S8
- Chain m
- 30S ribosomal protein S12
- Chain p
- 30S ribosomal protein S15
- Chain r
- 30S ribosomal protein S17
Coloring options: