J3_7NQH_015

3D structure

PDB id

7NQH (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRF1a and P-site tRNAMet

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CACC*GCAGUAA*UGAAUAAG

Length

19 nucleotides

Bulged bases

7NQH|1|AA|A|822

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NQH_015 not in the Motif Atlas

Homologous match to J3_5J7L_052

Geometric discrepancy: 0.4923

The information below is about J3_5J7L_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

7NQH|1|AA|C|542
7NQH|1|AA|A|543
7NQH|1|AA|C|544
7NQH|1|AA|C|545
*
7NQH|1|AA|G|788
7NQH|1|AA|C|789
7NQH|1|AA|A|790
7NQH|1|AA|G|791
7NQH|1|AA|U|792
7NQH|1|AA|A|793
7NQH|1|AA|A|794
*
7NQH|1|AA|U|816
7NQH|1|AA|G|817
7NQH|1|AA|A|818
7NQH|1|AA|A|819
7NQH|1|AA|U|820
7NQH|1|AA|A|821
7NQH|1|AA|A|822
7NQH|1|AA|G|823

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AG

28S ribosomal protein S7, mitochondrial

Chain AI

uS9m

Chain Am

mS37