J3_7NQL_016

3D structure

PDB id

7NQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with ICT1 and P site tRNAMet

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CACC*GCAGUAA*UGAAUAAG

Length

19 nucleotides

Bulged bases

7NQL|1|AA|A|822

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NQL_016 not in the Motif Atlas

Homologous match to J3_5J7L_052

Geometric discrepancy: 0.4702

The information below is about J3_5J7L_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

7NQL|1|AA|C|542
7NQL|1|AA|A|543
7NQL|1|AA|C|544
7NQL|1|AA|C|545
*
7NQL|1|AA|G|788
7NQL|1|AA|C|789
7NQL|1|AA|A|790
7NQL|1|AA|G|791
7NQL|1|AA|U|792
7NQL|1|AA|A|793
7NQL|1|AA|A|794
*
7NQL|1|AA|U|816
7NQL|1|AA|G|817
7NQL|1|AA|A|818
7NQL|1|AA|A|819
7NQL|1|AA|U|820
7NQL|1|AA|A|821
7NQL|1|AA|A|822
7NQL|1|AA|G|823

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AG

Mitochondrial ribosomal protein S7

Chain AI

uS9m

Chain Am

mS37