3D structure

PDB id
7NRC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
UC*GAGGACUGCG*CAAGGA
Length
18 nucleotides
Bulged bases
7NRC|1|LA|A|607
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7NRC_003 not in the Motif Atlas
Homologous match to J3_5TBW_003
Geometric discrepancy: 0.1069
The information below is about J3_5TBW_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_15033.1
Basepair signature
cWW-F-cWW-F-F-F-F-F-F-cWS-F-cWW-F
Number of instances in this motif group
2

Unit IDs

7NRC|1|LA|U|502
7NRC|1|LA|C|503
*
7NRC|1|LA|G|588
7NRC|1|LA|A|589
7NRC|1|LA|G|590
7NRC|1|LA|G|591
7NRC|1|LA|A|592
7NRC|1|LA|C|593
7NRC|1|LA|U|594
7NRC|1|LA|G|595
7NRC|1|LA|C|596
7NRC|1|LA|G|597
*
7NRC|1|LA|C|606
7NRC|1|LA|A|607
7NRC|1|LA|A|608
7NRC|1|LA|G|609
7NRC|1|LA|G|610
7NRC|1|LA|A|611

Current chains

Chain LA
25S rRNA (3184-MER)

Nearby chains

Chain LF
60S ribosomal protein L4-A
Chain LH
60S ribosomal protein L6-B
Chain LI
60S ribosomal protein L7-A
Chain Lg
60S ribosomal protein L32

Coloring options:


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