3D structure

PDB id
7NRC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
AUAG*CGUAG*UCGAAU
Length
15 nucleotides
Bulged bases
7NRC|1|LA|A|896
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7NRC_005 not in the Motif Atlas
Homologous match to J3_5TBW_005
Geometric discrepancy: 0.1022
The information below is about J3_5TBW_005
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_33851.1
Basepair signature
cWW-tSH-F-F-tHS-cWW-cWW-F-F
Number of instances in this motif group
1

Unit IDs

7NRC|1|LA|A|828
7NRC|1|LA|U|829
7NRC|1|LA|A|830
7NRC|1|LA|G|831
*
7NRC|1|LA|C|863
7NRC|1|LA|G|864
7NRC|1|LA|U|865
7NRC|1|LA|A|866
7NRC|1|LA|G|867
*
7NRC|1|LA|U|892
7NRC|1|LA|C|893
7NRC|1|LA|G|894
7NRC|1|LA|A|895
7NRC|1|LA|A|896
7NRC|1|LA|U|897

Current chains

Chain LA
25S rRNA (3184-MER)

Nearby chains

Chain LD
60S ribosomal protein L2-A
Chain LT
60S ribosomal protein L19-A
Chain Li
60S ribosomal protein L34-A

Coloring options:


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