J3_7NRC_008

3D structure

PDB id

7NRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGAAGUG*CAA*UCUA

Length

14 nucleotides

Bulged bases

7NRC|1|LA|A|1482

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NRC_008 not in the Motif Atlas

Homologous match to J3_8C3A_006

Geometric discrepancy: 0.1

The information below is about J3_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

7NRC|1|LA|U|1479
7NRC|1|LA|G|1480
7NRC|1|LA|A|1481
7NRC|1|LA|A|1482
7NRC|1|LA|G|1483
7NRC|1|LA|U|1484
7NRC|1|LA|G|1485
*
7NRC|1|LA|C|1857
7NRC|1|LA|A|1858
7NRC|1|LA|A|1859
*
7NRC|1|LA|U|1871
7NRC|1|LA|C|1872
7NRC|1|LA|U|1873
7NRC|1|LA|A|1874

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LT

60S ribosomal protein L19-A

Chain Li

60S ribosomal protein L34-A