3D structure

PDB id
7NRC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
AUUG*CUUAUU*AAGACAUU
Length
18 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7NRC_012 not in the Motif Atlas
Homologous match to J3_8C3A_008
Geometric discrepancy: 0.0992
The information below is about J3_8C3A_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_18654.1
Basepair signature
cWW-F-F-tSH-tHW-F-F-F-cWW-F-cWW-F-F
Number of instances in this motif group
2

Unit IDs

7NRC|1|LA|A|2432
7NRC|1|LA|U|2433
7NRC|1|LA|U|2434
7NRC|1|LA|G|2435
*
7NRC|1|LA|C|2512
7NRC|1|LA|U|2513
7NRC|1|LA|U|2514
7NRC|1|LA|A|2515
7NRC|1|LA|U|2516
7NRC|1|LA|U|2517
*
7NRC|1|LA|A|2590
7NRC|1|LA|A|2591
7NRC|1|LA|G|2592
7NRC|1|LA|A|2593
7NRC|1|LA|C|2594
7NRC|1|LA|A|2595
7NRC|1|LA|U|2596
7NRC|1|LA|U|2597

Current chains

Chain LA
25S rRNA (3184-MER)

Nearby chains

Chain LD
60S ribosomal protein L2-A
Chain LJ
60S ribosomal protein L8-A
Chain LP
60S ribosomal protein L15-A
Chain Lk
60S ribosomal protein L36-A

Coloring options:


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